A reference catalog of tissues and disease conditions for human and mouse, used to contextualize cell-type annotation by tissue and pathological state.
Format
An object of class CelliVerse_Data, implemented as a named list with
two elements:
- human
A list containing:
- all_tissues
Character vector of all supported tissues (length 396)
- healthy_tissue
Character vector of healthy tissues (length 367)
- diseased_tissue
Character vector of diseased tissues (length 103)
- all_conditions
Character vector of all supported conditions (length 265)
- diseased_tissueCondition
A data frame with two variables:
- Tissue
Tissue name
- Condition
Associated disease condition
- mouse
A list containing:
- all_tissues
Character vector of all supported tissues (length 110)
- healthy_tissue
Character vector of healthy tissues (length 108)
- diseased_tissue
Character vector of diseased tissues (length 19)
- all_conditions
Character vector of all supported conditions (length 51)
- diseased_tissueCondition
A data frame with two variables:
- Tissue
Tissue name
- Condition
Associated disease condition
Details
This dataset is used by typoClust() to restrict or guide cell-type
annotation according to tissue context and disease state.